Analyzing Transformer Attention and Domain Prediction for Homology Search
- Title
- Analyzing Transformer Attention and Domain Prediction for Homology Search
- Other Titles
- 단백질 서열의 상동성 검색을 위한 트랜스포머 어텐션과 도메인 예측성 분석
- Author
- 이재원
- Alternative Author(s)
- Jae-Won Lee
- Advisor(s)
- Yung-Kyun Noh
- Issue Date
- 2024. 2
- Publisher
- 한양대학교 대학원
- Degree
- Master
- Abstract
- We explore the utility of attention networks in analyzing protein data. While previous research has shown the ability of attention networks to learn contacts in protein sequences and tertiary structures, the underlying mechanisms of their learning process remain unclear. In this thesis, we propose the use of synthetic protein data to investigate this issue and demonstrate that attention networks are capable of effectively capturing hidden features within a dataset. Moreover, we show evidence of their capability to manage more intricate tasks, such as domain prediction. We then present a novel approach for improving the homology search through the application of trained attention networks.
- URI
- http://hanyang.dcollection.net/common/orgView/200000725523https://repository.hanyang.ac.kr/handle/20.500.11754/188395
- Appears in Collections:
- GRADUATE SCHOOL[S](대학원) > COMPUTER SCIENCE(컴퓨터·소프트웨어학과) > Theses (Master)
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