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3D Structure, Dimerization Modeling, and Lead Discovery by Ligand-protein Interaction Analysis of p60 Transcription Regulator Protein (p60TRP)

Title
3D Structure, Dimerization Modeling, and Lead Discovery by Ligand-protein Interaction Analysis of p60 Transcription Regulator Protein (p60TRP)
Author
Heese, Klaus
Keywords
BHLHB9; p60TRP; in silico; interaction; lead discovery; brain; Alzheimer's disease
Issue Date
2016-04
Publisher
WILEY-V C H VERLAG GMBH
Citation
MOLECULAR INFORMATICS, v. 35, NO 3-4, Page. 99-108
Abstract
The p60 transcription regulator protein (p60TRP) is a basic helix-loop-helix (bHLH) domain-containing neuroprotective protein and a member of the G-protein-coupled receptor (GPCR)-associated sorting protein (GPRASP) family. In the present study, multiple theoretical physico-chemical methods (e. g. Modeller v.9.13, I-TASSER, PROCHECK and ClusPro v2.0 with PIPER) were applied to unveil the three-dimensional (3D) protein structure of the p60TRP homodimer protein and explore potential ligand-protein interactions. Our results suggest a Mg2+-containing 3D p60TRP dimer protein that potentially interacts with 5-(1-aziridinyl)-2,4-dinitrobenzamide (CB1954) and [2-(3-dodecylimidazolidin-1-yl)-1-phosphonoethyl] phosphonic acid (B73). The discovery of CB1954 and B73 may serve as a potential lead for further drug screening tests to normalize the p60TRP signaling pathway in neurodegenerative diseases. Interference with p60TRP signaling via CB1954/B73-related molecules might be a novel option for modifying neurodegenerative signaling pathways (e. g. RIN1, PP2A, RanBP5, CREB and SYNJ1) to treat various brain diseases.
URI
https://onlinelibrary.wiley.com/doi/abs/10.1002/minf.201500035http://hdl.handle.net/20.500.11754/49275
ISSN
1868-1743; 1868-1751
DOI
10.1002/minf.201500035
Appears in Collections:
GRADUATE SCHOOL OF BIOMEDICAL SCIENCE AND ENGINEERING[S](의생명공학전문대학원) > ETC
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