| 2020-04 | AniFilter: Parallel and Failure-Atomic Cuckoo Filter for Non-Volatile Memories | 박희진 |
| 2014-12 | Compact variant-rich customized sequence database and a fast and sensitive database search for efficient proteogenomic analyses | 박희진 |
| 2016-10 | Design and Analysis of Efficient Parallel Hardware Prime Generators | 박희진 |
| 2011-09 | Efficient algorithms for consensus string problems minimizing both distance sum and radius | 박희진 |
| 2017-09 | fast prime number generation algorithms on smart mobile devices | 박희진 |
| 2013-01 | Finding consensus and optimal alignment of circular strings | 박희진 |
| 2018-02 | FM-index of alignment with gaps | 박희진 |
| 2016-07 | FM-index of alignment: A compressed index for similar strings | 박희진 |
| 2015-12 | HiXCorr: a portable high-speed X-Corr engine for high-resolution tandem mass spectrometry | 박희진 |
| 2011-11 | Human Genome에서 MS/MS spectrum 동정을 위한 효율적인 Exon Graph 구축 | 박희진 |
| 2018-12 | iMGEins: detecting novel mobile genetic elements inserted in individual genomes | 박희진 |
| 2012-09 | Monoisotopic Mass Determination Algorithm for Selenocysteine-Containing Polypeptides from Mass Spectrometric Data Based on Theoretical Modeling of Isotopic Peak Intensity Ratios | 박희진 |
| 2015-05 | NextSearch: A Search Engine for Mass Spectrometry Data against a Compact Nucleotide Exon Graph | 박희진 |
| 2011-06 | Probabilistic Analysis on the Optimal Combination of Trial Division and Probabilistic Primality Tests for Safe Prime Generation | 박희진 |
| 2019-01 | Proteogenomic Characterization of Human Early-Onset Gastric Cancer | 박희진 |
| 2011-11 | Q-TOF 탠덤 질량 스펙트럼을 위한 효율적인 Peak Picking 알고리즘 | 박희진 |
| 2016-12 | A space-efficient alphabet-independent Four-Russians' lookup table and a multithreaded Four-Russians' edit distance algorithm | 박희진 |
| 2013-10 | Suffix Array of Alignment: A Practical Index for Similar Data. | 박희진 |
| 2013-07 | Suffix Tree of Alignment: An Efficient Index for Similar Data. | 박희진 |
| 2019-08 | Target-small decoy search strategy for false discovery rate estimation | 박희진 |
